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Items 1 - 20 of 123
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1:

A weighted average difference method for detecting differentially expressed genes from microarray data.

Kadota K, Nakai Y, Shimizu K.

Algorithms Mol Biol. 2008 Jun 26;3:8.

PMID: 18578891 [PubMed]

2:

A unified framework for finding differentially expressed genes from microarray experiments.

Shaik JS, Yeasin M.

BMC Bioinformatics. 2007 Sep 18;8:347.

PMID: 17877806 [PubMed - indexed for MEDLINE]

3:

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

Jeffery IB, Higgins DG, Culhane AC.

BMC Bioinformatics. 2006 Jul 26;7:359.

PMID: 16872483 [PubMed - indexed for MEDLINE]

4:

Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.

Sartor MA, Tomlinson CR, Wesselkamper SC, Sivaganesan S, Leikauf GD, Medvedovic M.

BMC Bioinformatics. 2006 Dec 19;7:538.

PMID: 17177995 [PubMed - indexed for MEDLINE]

5:

A distribution free summarization method for Affymetrix GeneChip arrays.

Chen Z, McGee M, Liu Q, Scheuermann RH.

Bioinformatics. 2007 Feb 1;23(3):321-7. Epub 2006 Dec 5.

PMID: 17148508 [PubMed - indexed for MEDLINE]

6:

Methods for evaluating gene expression from Affymetrix microarray datasets.

Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.

BMC Bioinformatics. 2008 Jun 17;9:284.

PMID: 18559105 [PubMed - indexed for MEDLINE]

7:

Reproducibility-optimized test statistic for ranking genes in microarray studies.

Elo LL, Filén S, Lahesmaa R, Aittokallio T.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep;5(3):423-31.

PMID: 18670045 [PubMed - indexed for MEDLINE]

8:

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID: 15117752 [PubMed - indexed for MEDLINE]

10:

Microarray data analysis: a practical approach for selecting differentially expressed genes.

Mutch DM, Berger A, Mansourian R, Rytz A, Roberts MA.

Genome Biol. 2001;2(12):PREPRINT0009. Epub 2001 Nov 16.

PMID: 11790248 [PubMed - indexed for MEDLINE]

11:

A new summarization method for Affymetrix probe level data.

Hochreiter S, Clevert DA, Obermayer K.

Bioinformatics. 2006 Apr 15;22(8):943-9. Epub 2006 Feb 10.

PMID: 16473874 [PubMed - indexed for MEDLINE]

12:

Probability fold change: A robust computational approach for identifying differentially expressed gene lists.

Deng X, Xu J, Hui J, Wang C.

Comput Methods Programs Biomed. 2008 Oct 6. [Epub ahead of print]

PMID: 18842321 [PubMed - as supplied by publisher]

13:

Empirical validation of the S-Score algorithm in the analysis of gene expression data.

Kennedy RE, Archer KJ, Miles MF.

BMC Bioinformatics. 2006 Mar 17;7:154.

PMID: 16545131 [PubMed - indexed for MEDLINE]

14:

How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results.

Millenaar FF, Okyere J, May ST, van Zanten M, Voesenek LA, Peeters AJ.

BMC Bioinformatics. 2006 Mar 15;7:137.

PMID: 16539732 [PubMed - indexed for MEDLINE]

15:

Rank-based methods as a non-parametric alternative of the T-statistic for the analysis of biological microarray data.

Breitling R, Herzyk P.

J Bioinform Comput Biol. 2005 Oct;3(5):1171-89.

PMID: 16278953 [PubMed - indexed for MEDLINE]

16:

Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.

Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S.

BMC Bioinformatics. 2005 Feb 10;6:26.

PMID: 15705192 [PubMed - indexed for MEDLINE]

17:

Identifying differentially expressed genes from microarray experiments via statistic synthesis.

Yang YH, Xiao Y, Segal MR.

Bioinformatics. 2005 Apr 1;21(7):1084-93. Epub 2004 Oct 28.

PMID: 15513985 [PubMed - indexed for MEDLINE]

18:

Hotelling's T2 multivariate profiling for detecting differential expression in microarrays.

Lu Y, Liu PY, Xiao P, Deng HW.

Bioinformatics. 2005 Jul 15;21(14):3105-13. Epub 2005 May 19.

PMID: 15905280 [PubMed - indexed for MEDLINE]

19:

Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays.

Hess A, Iyer H.

BMC Genomics. 2007 Apr 9;8:96.

PMID: 17419876 [PubMed - indexed for MEDLINE]

20:

Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction.

Galfalvy HC, Erraji-Benchekroun L, Smyrniotopoulos P, Pavlidis P, Ellis SP, Mann JJ, Sibille E, Arango V.

BMC Bioinformatics. 2003 Sep 8;4:37. Epub 2003 Sep 8.

PMID: 12962547 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 123
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