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Items 1 - 20 of 74
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1:

Consistency of the neighbor-net algorithm.

Bryant D, Moulton V, Spillner A.

Algorithms Mol Biol. 2007 Jun 28;2:8.

PMID: 17597551 [PubMed]

2:

Neighbor-joining uses the optimal weight for net divergence.

Charleston MA, Hendy MD, Penny D.

Mol Phylogenet Evol. 1993 Mar;2(1):6-12.

PMID: 8081548 [PubMed - indexed for MEDLINE]

3:

Reconstructing an ultrametric galled phylogenetic network from a distance matrix.

Chan HL, Jansson J, Lam TW, Yiu SM.

J Bioinform Comput Biol. 2006 Aug;4(4):807-32.

PMID: 17007069 [PubMed - indexed for MEDLINE]

4:

Neighbor-net: an agglomerative method for the construction of phylogenetic networks.

Bryant D, Moulton V.

Mol Biol Evol. 2004 Feb;21(2):255-65. Epub 2003 Dec 5.

PMID: 14660700 [PubMed - indexed for MEDLINE]

5:

Relaxed neighbor joining: a fast distance-based phylogenetic tree construction method.

Evans J, Sheneman L, Foster J.

J Mol Evol. 2006 Jun;62(6):785-92. Epub 2006 Apr 28.

PMID: 16752216 [PubMed - indexed for MEDLINE]

6:

QNet: an agglomerative method for the construction of phylogenetic networks from weighted quartets.

Grünewald S, Forslund K, Dress A, Moulton V.

Mol Biol Evol. 2007 Feb;24(2):532-8. Epub 2006 Nov 21.

PMID: 17119010 [PubMed - indexed for MEDLINE]

7:

Relaxed Neighbor Joining: A Fast Distance-Based Phylogenetic Tree Construction Method.

Evans J, Sheneman L, Foster J.

J Mol Evol. 2006 Apr 28. [Epub ahead of print]

PMID: 16652244 [PubMed - as supplied by publisher]

8:

Beyond pairwise distances: neighbor-joining with phylogenetic diversity estimates.

Levy D, Yoshida R, Pachter L.

Mol Biol Evol. 2006 Mar;23(3):491-8. Epub 2005 Nov 9.

PMID: 16280538 [PubMed - indexed for MEDLINE]

10:

Fast computation of distance estimators.

Elias I, Lagergren J.

BMC Bioinformatics. 2007 Mar 13;8:89.

PMID: 17355623 [PubMed - indexed for MEDLINE]

11:

Minimum evolution using ordinary least-squares is less robust than neighbor-joining.

Willson SJ.

Bull Math Biol. 2005 Mar;67(2):261-79.

PMID: 15710181 [PubMed - indexed for MEDLINE]

12:

Evolution of naturally occurring 5'non-coding region variants of Hepatitis C virus in human populations of the South American region.

Moratorio G, Martínez M, Gutiérrez MF, González K, Colina R, López-Tort F, López L, Recarey R, Schijman AG, Moreno MP, García-Aguirre L, Manascero AR, Cristina J.

Virol J. 2007 Aug 2;4:79.

PMID: 17683527 [PubMed - indexed for MEDLINE]

13:

Cophenetic correlation analysis as a strategy to select phylogenetically informative proteins: an example from the fungal kingdom.

Kuramae EE, Robert V, Echavarri-Erasun C, Boekhout T.

BMC Evol Biol. 2007 Aug 9;7:134.

PMID: 17688684 [PubMed - indexed for MEDLINE]

14:

Neighbor joining algorithms for inferring phylogenies via LCA distances.

Gronau I, Moran S.

J Comput Biol. 2007 Jan-Feb;14(1):1-15.

PMID: 17381342 [PubMed - indexed for MEDLINE]

15:

BPhyOG: an interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes.

Luo Y, Fu C, Zhang DY, Lin K.

BMC Bioinformatics. 2007 Jul 25;8:266.

PMID: 17650344 [PubMed - indexed for MEDLINE]

16:

On the optimality of the neighbor-joining algorithm.

Eickmeyer K, Huggins P, Pachter L, Yoshida R.

Algorithms Mol Biol. 2008 Apr 30;3:5.

PMID: 18447942 [PubMed]

17:

Selecting taxa to save or sequence: desirable criteria and a greedy solution.

Bordewich M, Rodrigo AG, Semple C.

Syst Biol. 2008 Dec;57(6):825-34.

PMID: 19085326 [PubMed - in process]

18:

Nearest neighbor search in general metric spaces using a tree data structure with a simple heuristic.

Xu H, Agrafiotis DK.

J Chem Inf Comput Sci. 2003 Nov-Dec;43(6):1933-41.

PMID: 14632443 [PubMed]

19:

Stability of characters and construction of phylogenetic trees.

Przytycka T.

J Comput Biol. 2007 Jun;14(5):539-49.

PMID: 17683259 [PubMed - indexed for MEDLINE]

20:

Unique reconstruction of tree-like phylogenetic networks from distances between leaves.

Willson SJ.

Bull Math Biol. 2006 May;68(4):919-44. Epub 2006 Apr 8.

PMID: 16802089 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 74
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