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Items 1 - 20 of 106
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1:

A novel functional module detection algorithm for protein-protein interaction networks.

Hwang W, Cho YR, Zhang A, Ramanathan M.

Algorithms Mol Biol. 2006 Dec 5;1:24.

PMID: 17147822 [PubMed]

2:

CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions.

Hwang W, Cho YR, Zhang A, Ramanathan M.

BMC Bioinformatics. 2008 Jan 29;9:64.

PMID: 18230159 [PubMed - indexed for MEDLINE]

3:

Semantic integration to identify overlapping functional modules in protein interaction networks.

Cho YR, Hwang W, Ramanathan M, Zhang A.

BMC Bioinformatics. 2007 Jul 24;8:265.

PMID: 17650343 [PubMed - indexed for MEDLINE]

4:

A structural approach for finding functional modules from large biological networks.

Mete M, Tang F, Xu X, Yuruk N.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S19.

PMID: 18793464 [PubMed - indexed for MEDLINE]

5:

Evaluation of clustering algorithms for protein-protein interaction networks.

Brohée S, van Helden J.

BMC Bioinformatics. 2006 Nov 6;7:488.

PMID: 17087821 [PubMed - indexed for MEDLINE]

6:

Identification of functional modules in a PPI network by clique percolation clustering.

Zhang S, Ning X, Zhang XS.

Comput Biol Chem. 2006 Dec;30(6):445-51. Epub 2006 Nov 13.

PMID: 17098476 [PubMed - indexed for MEDLINE]

7:

Combining functional and topological properties to identify core modules in protein interaction networks.

Lubovac Z, Gamalielsson J, Olsson B.

Proteins. 2006 Sep 1;64(4):948-59.

PMID: 16794996 [PubMed - indexed for MEDLINE]

8:

Assessing significance of connectivity and conservation in protein interaction networks.

Koyutürk M, Szpankowski W, Grama A.

J Comput Biol. 2007 Jul-Aug;14(6):747-64.

PMID: 17691892 [PubMed - indexed for MEDLINE]

9:

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods.

Huttenhower C, Flamholz AI, Landis JN, Sahi S, Myers CL, Olszewski KL, Hibbs MA, Siemers NO, Troyanskaya OG, Coller HA.

BMC Bioinformatics. 2007 Jul 12;8:250.

PMID: 17626636 [PubMed - indexed for MEDLINE]

10:

An ensemble framework for clustering protein-protein interaction networks.

Asur S, Ucar D, Parthasarathy S.

Bioinformatics. 2007 Jul 1;23(13):i29-40.

PMID: 17646309 [PubMed - indexed for MEDLINE]

11:

An in silico method for detecting overlapping functional modules from composite biological networks.

Maraziotis IA, Dimitrakopoulou K, Bezerianos A.

BMC Syst Biol. 2008 Nov 1;2:93.

PMID: 18976494 [PubMed - in process]

12:

Detection of functional modules from protein interaction networks.

Pereira-Leal JB, Enright AJ, Ouzounis CA.

Proteins. 2004 Jan 1;54(1):49-57.

PMID: 14705023 [PubMed - indexed for MEDLINE]

13:

Clustering by common friends finds locally significant proteins mediating modules.

Andreopoulos B, An A, Wang X, Faloutsos M, Schroeder M.

Bioinformatics. 2007 May 1;23(9):1124-31. Epub 2007 Feb 21.

PMID: 17314122 [PubMed - indexed for MEDLINE]

14:

A graph-based approach to systematically reconstruct human transcriptional regulatory modules.

Yan X, Mehan MR, Huang Y, Waterman MS, Yu PS, Zhou XJ.

Bioinformatics. 2007 Jul 1;23(13):i577-86.

PMID: 17646346 [PubMed - indexed for MEDLINE]

15:

Modular organization of protein interaction networks.

Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH.

Bioinformatics. 2007 Jan 15;23(2):207-14. Epub 2006 Nov 8. Erratum in: Bioinformatics. 2007 Apr 1;23(7):916.

PMID: 17092991 [PubMed - indexed for MEDLINE]

16:

CLUSS: clustering of protein sequences based on a new similarity measure.

Kelil A, Wang S, Brzezinski R, Fleury A.

BMC Bioinformatics. 2007 Aug 4;8:286.

PMID: 17683581 [PubMed - indexed for MEDLINE]

17:

Detecting conserved interaction patterns in biological networks.

Koyutürk M, Kim Y, Subramaniam S, Szpankowski W, Grama A.

J Comput Biol. 2006 Sep;13(7):1299-322.

PMID: 17037960 [PubMed - indexed for MEDLINE]

18:

Fast and accurate method for identifying high-quality protein-interaction modules by clique merging and its application to yeast.

Zhang C, Liu S, Zhou Y.

J Proteome Res. 2006 Apr;5(4):801-7.

PMID: 16602686 [PubMed - indexed for MEDLINE]

19:

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

BMC Bioinformatics. 2007 Jul 10;8:243.

PMID: 17620146 [PubMed - indexed for MEDLINE]

20:

Recursive cluster elimination (RCE) for classification and feature selection from gene expression data.

Yousef M, Jung S, Showe LC, Showe MK.

BMC Bioinformatics. 2007 May 2;8:144.

PMID: 17474999 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 106
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