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Items 1 - 20 of 84
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1:

Reconstructing protein structure from solvent exposure using tabu search.

Paluszewski M, Hamelryck T, Winter P.

Algorithms Mol Biol. 2006 Oct 27;1:20.

PMID: 17069644 [PubMed]

2:

An amino acid has two sides: a new 2D measure provides a different view of solvent exposure.

Hamelryck T.

Proteins. 2005 Apr 1;59(1):38-48.

PMID: 15688434 [PubMed - indexed for MEDLINE]

3:

Improving protein structure prediction with model-based search.

Brunette TJ, Brock O.

Bioinformatics. 2005 Jun;21 Suppl 1:i66-74.

PMID: 15961500 [PubMed - indexed for MEDLINE]

4:

Design of a knowledge-based force field for off-lattice simulations of protein structure.

Liwo A, Ołdziej S, Kaźmierkiewicz R, Groth M, Czaplewski C.

Acta Biochim Pol. 1997;44(3):527-47. Review.

PMID: 9511963 [PubMed - indexed for MEDLINE]

5:

Application of tabu search strategy for finding low energy structure of protein.

Błazewicz J, Lukasiak P, Miłostan M.

Artif Intell Med. 2005 Sep-Oct;35(1-2):135-45.

PMID: 16051476 [PubMed - indexed for MEDLINE]

6:

An adaptive bin framework search method for a beta-sheet protein homopolymer model.

Shmygelska A, Hoos HH.

BMC Bioinformatics. 2007 Apr 24;8:136.

PMID: 17451609 [PubMed - indexed for MEDLINE]

7:

Empirical potential function for simplified protein models: combining contact and local sequence-structure descriptors.

Zhang J, Chen R, Liang J.

Proteins. 2006 Jun 1;63(4):949-60.

PMID: 16477624 [PubMed - indexed for MEDLINE]

8:

Scoring predictive models using a reduced representation of proteins: model and energy definition.

Fogolari F, Pieri L, Dovier A, Bortolussi L, Giugliarelli G, Corazza A, Esposito G, Viglino P.

BMC Struct Biol. 2007 Mar 23;7:15.

PMID: 17378941 [PubMed - indexed for MEDLINE]

9:

Can a physics-based, all-atom potential find a protein's native structure among misfolded structures? I. Large scale AMBER benchmarking.

Wroblewska L, Skolnick J.

J Comput Chem. 2007 Sep;28(12):2059-66.

PMID: 17407093 [PubMed - indexed for MEDLINE]

10:

Automated de novo prediction of native-like RNA tertiary structures.

Das R, Baker D.

Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14664-9. Epub 2007 Aug 28.

PMID: 17726102 [PubMed - indexed for MEDLINE]

11:

Ab initio modeling of small proteins by iterative TASSER simulations.

Wu S, Skolnick J, Zhang Y.

BMC Biol. 2007 May 8;5:17.

PMID: 17488521 [PubMed - indexed for MEDLINE]

12:

PEPstr: a de novo method for tertiary structure prediction of small bioactive peptides.

Kaur H, Garg A, Raghava GP.

Protein Pept Lett. 2007;14(7):626-31.

PMID: 17897087 [PubMed - indexed for MEDLINE]

13:

Projections for fast protein structure retrieval.

Bhattacharya S, Bhattacharyya C, Chandra NR.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S5.

PMID: 17254310 [PubMed - indexed for MEDLINE]

14:

A topological algorithm for identification of structural domains of proteins.

Emmert-Streib F, Mushegian A.

BMC Bioinformatics. 2007 Jul 3;8:237.

PMID: 17608939 [PubMed - indexed for MEDLINE]

15:

Monte Carlo sampling of near-native structures of proteins with applications.

Zhang J, Lin M, Chen R, Liang J, Liu JS.

Proteins. 2007 Jan 1;66(1):61-8.

PMID: 17039507 [PubMed - indexed for MEDLINE]

16:

Nearest-neighbor effects on backbone alpha and beta carbon chemical shifts in proteins.

Wang L, Eghbalnia HR, Markley JL.

J Biomol NMR. 2007 Nov;39(3):247-57.

PMID: 17899393 [PubMed - indexed for MEDLINE]

17:

A structure-centric view of protein evolution, design, and adaptation.

Deeds EJ, Shakhnovich EI.

Adv Enzymol Relat Areas Mol Biol. 2007;75:133-91, xi-xii. Review.

PMID: 17124867 [PubMed - indexed for MEDLINE]

18:

Protein sequence design based on the topology of the native state structure.

Jha AN, Ananthasuresh GK, Vishveshwara S.

J Theor Biol. 2007 Sep 7;248(1):81-90. Epub 2007 Apr 27.

PMID: 17543996 [PubMed - indexed for MEDLINE]

19:

HYPLOSP: a knowledge-based approach to protein local structure prediction.

Chen CT, Lin HN, Sung TY, Hsu WL.

J Bioinform Comput Biol. 2006 Dec;4(6):1287-307.

PMID: 17245815 [PubMed - indexed for MEDLINE]

20:

Protein folding by zipping and assembly.

Ozkan SB, Wu GA, Chodera JD, Dill KA.

Proc Natl Acad Sci U S A. 2007 Jul 17;104(29):11987-92. Epub 2007 Jul 9.

PMID: 17620603 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 84
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