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Items 1 - 20 of 75
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1:

Analysis of computational approaches for motif discovery.

Li N, Tompa M.

Algorithms Mol Biol. 2006 May 19;1:8.

PMID: 16722558 [PubMed]

2:

Improved benchmarks for computational motif discovery.

Sandve GK, Abul O, Walseng V, Drabløs F.

BMC Bioinformatics. 2007 Jun 8;8:193.

PMID: 17559676 [PubMed - indexed for MEDLINE]

3:

Comparative analysis of regulatory motif discovery tools for transcription factor binding sites.

Wei W, Yu XD.

Genomics Proteomics Bioinformatics. 2007 May;5(2):131-42.

PMID: 17893078 [PubMed - indexed for MEDLINE]

4:

Identification of degenerate motifs using position restricted selection and hybrid ranking combination.

Peng CH, Hsu JT, Chung YS, Lin YJ, Chow WY, Hsu DF, Tang CY.

Nucleic Acids Res. 2006;34(22):6379-91. Epub 2006 Nov 27.

PMID: 17130169 [PubMed - indexed for MEDLINE]

5:

Discovering motifs in ranked lists of DNA sequences.

Eden E, Lipson D, Yogev S, Yakhini Z.

PLoS Comput Biol. 2007 Mar 23;3(3):e39.

PMID: 17381235 [PubMed - indexed for MEDLINE]

6:

Detection of generic spaced motifs using submotif pattern mining.

Wijaya E, Rajaraman K, Yiu SM, Sung WK.

Bioinformatics. 2007 Jun 15;23(12):1476-85. Epub 2007 May 5.

PMID: 17483509 [PubMed - indexed for MEDLINE]

7:

An equilibrium partitioning model connecting gene expression and cis-motif content.

Mellor J, DeLisi C.

Bioinformatics. 2006 Jul 15;22(14):e368-74.

PMID: 16873495 [PubMed - indexed for MEDLINE]

8:

A survey of motif discovery methods in an integrated framework.

Sandve GK, Drabløs F.

Biol Direct. 2006 Apr 6;1:11.

PMID: 16600018 [PubMed]

9:

CoMoDis: composite motif discovery in mammalian genomes.

Donaldson IJ, Göttgens B.

Nucleic Acids Res. 2007;35(1):e1. Epub 2006 Nov 27.

PMID: 17130158 [PubMed - indexed for MEDLINE]

10:

Meta-analysis based on control of false discovery rate: combining yeast ChIP-chip datasets.

Pyne S, Futcher B, Skiena S.

Bioinformatics. 2006 Oct 15;22(20):2516-22. Epub 2006 Aug 14.

PMID: 16908499 [PubMed - indexed for MEDLINE]

11:

Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches.

Jin VX, O'Geen H, Iyengar S, Green R, Farnham PJ.

Genome Res. 2007 Jun;17(6):807-17.

PMID: 17567999 [PubMed - indexed for MEDLINE]

12:

Informative priors based on transcription factor structural class improve de novo motif discovery.

Narlikar L, Gordân R, Ohler U, Hartemink AJ.

Bioinformatics. 2006 Jul 15;22(14):e384-92.

PMID: 16873497 [PubMed - indexed for MEDLINE]

13:

A novel ensemble learning method for de novo computational identification of DNA binding sites.

Chakravarty A, Carlson JM, Khetani RS, Gross RH.

BMC Bioinformatics. 2007 Jul 12;8:249.

PMID: 17626633 [PubMed - indexed for MEDLINE]

14:

Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles.

Piening BD, Wang P, Bangur CS, Whiteaker J, Zhang H, Feng LC, Keane JF, Eng JK, Tang H, Prakash A, McIntosh MW, Paulovich A.

J Proteome Res. 2006 Jul;5(7):1527-34.

PMID: 16823959 [PubMed - indexed for MEDLINE]

15:

Computational approaches for the discovery of bacterial small RNAs.

Kulkarni RV, Kulkarni PR.

Methods. 2007 Oct;43(2):131-9.

PMID: 17889800 [PubMed - indexed for MEDLINE]

16:

IEM: an algorithm for iterative enhancement of motifs using comparative genomics data.

Zeng E, Mathee K, Narasimhan G.

Comput Syst Bioinformatics Conf. 2007;6:227-35.

PMID: 17951827 [PubMed - indexed for MEDLINE]

17:

Prediction of protein subcellular localization.

Yu CS, Chen YC, Lu CH, Hwang JK.

Proteins. 2006 Aug 15;64(3):643-51.

PMID: 16752418 [PubMed - indexed for MEDLINE]

20:

Finding linear motif pairs from protein interaction networks: a probabilistic approach.

Leung HC, Siu MH, Yiu SM, Chin FY, Sung KW.

Comput Syst Bioinformatics Conf. 2007;6:111-9.

PMID: 17951817 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 75
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