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Efficient and accurate P-value computation for Position Weight Matrices
Hélène Touzet, Jean-Stéphane Varré Algorithms for Molecular Biology 2007, 2:15 (11 December 2007)
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Review of "Reconstructing Evolution: New mathematical and computational advances" edited by Olivier Gascuel and Mike Steel
Andreas Spillner Algorithms for Molecular Biology 2007, 2:14 (6 November 2007)
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Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules
Valentina Boeva, Julien Clément, Mireille Régnier, Mikhail A Roytberg, Vsevolod J Makeev Algorithms for Molecular Biology 2007, 2:13 (10 October 2007)
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Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation
Rodrigo Gouveia-Oliveira, Anders G Pedersen Algorithms for Molecular Biology 2007, 2:12 (3 October 2007)
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Mapping sequences by parts
Gilles Didier, Carito Guziolowski Algorithms for Molecular Biology 2007, 2:11 (19 September 2007)
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A basic analysis toolkit for biological sequences
Raffaele Giancarlo, Alessandro Siragusa, Enrico Siragusa, Filippo Utro Algorithms for Molecular Biology 2007, 2:10 (18 September 2007)
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Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail
Stefan Wolfsheimer, Bernd Burghardt, Alexander K Hartmann Algorithms for Molecular Biology 2007, 2:9 (11 July 2007)
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Consistency of the Neighbor-Net Algorithm
David Bryant, Vincent Moulton, Andreas Spillner Algorithms for Molecular Biology 2007, 2:8 (28 June 2007)
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Characteristics of predictor sets found using differential prioritization
Chia Ooi, Madhu Chetty, Shyh Teng Algorithms for Molecular Biology 2007, 2:7 (4 June 2007)
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RNAstrand: reading direction of structured RNAs in multiple sequence alignments
Kristin Reiche, Peter F Stadler Algorithms for Molecular Biology 2007, 2:6 (31 May 2007)
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GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data
Koji Kadota, Ryoko Araki, Yuji Nakai, Masumi Abe Algorithms for Molecular Biology 2007, 2:5 (30 May 2007)
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Data Mining in Bioinformatics (BIOKDD)
Mohammed J Zaki, George Karypis, Jiong Yang Algorithms for Molecular Biology 2007, 2:4 (11 April 2007)
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A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories
Hui Yang, Srinivasan Parthasarathy, Duygu Ucar Algorithms for Molecular Biology 2007, 2:3 (4 April 2007)
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Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
Jingjun Sun, Kagan Tuncay, Alaa Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter Ortoleva Algorithms for Molecular Biology 2007, 2:2 (30 March 2007)
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PhyloScan: identification of transcription factor binding sites using cross-species evidence
C Steven Carmack, Lee McCue, Lee A Newberg, Charles E Lawrence Algorithms for Molecular Biology 2007, 2:1 (23 January 2007)
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Probability-based model of protein-protein interactions on biological timescales
Alexander L Tournier, Paul W Fitzjohn, Paul A Bates Algorithms for Molecular Biology 2006, 1:25 (11 December 2006)
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A novel functional module detection algorithm for protein-protein interaction networks
Woochang Hwang, Young-Rae Cho, Aidong Zhang, Murali Ramanathan Algorithms for Molecular Biology 2006, 1:24 (5 December 2006)
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Refining motifs by improving information content scores using neighborhood profile search
Chandan K Reddy, Yao-Chung Weng, Hsiao-Dong Chiang Algorithms for Molecular Biology 2006, 1:23 (27 November 2006)
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SMOTIF: efficient structured pattern and profile motif search
Yongqiang Zhang, Mohammed J Zaki Algorithms for Molecular Biology 2006, 1:22 (21 November 2006)
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EXMOTIF: efficient structured motif extraction
Yongqiang Zhang, Mohammed J Zaki Algorithms for Molecular Biology 2006, 1:21 (16 November 2006)
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Reconstructing protein structure from solvent exposure using tabu search
Martin Paluszewski, Thomas Hamelryck, Pawel Winter Algorithms for Molecular Biology 2006, 1:20 (27 October 2006)
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An enhanced RNA alignment benchmark for sequence alignment programs
Andreas Wilm, Indra Mainz, Gerhard Steger Algorithms for Molecular Biology 2006, 1:19 (24 October 2006)
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Computing distribution of scale independent motifs in biological sequences
Jonas S Almeida, Susana Vinga Algorithms for Molecular Biology 2006, 1:18 (18 October 2006)
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Pattern statistics on Markov chains and sensitivity to parameter estimation
Grégory Nuel Algorithms for Molecular Biology 2006, 1:17 (17 October 2006)
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Fast calculation of the quartet distance between trees of arbitrary degrees
Chris Christiansen, Thomas Mailund, Christian NS Pedersen, Martin Randers, Martin Stissing Algorithms for Molecular Biology 2006, 1:16 (25 September 2006)
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