Table 2

Number of RMSD computations for the semfold decoy dataset.

Decoy set

This work

<a onClick="popup('http://www.almob.org/content/7/1/16/mathml/M1','MathML',630,470);return false;" target="_blank" href="http://www.almob.org/content/7/1/16/mathml/M1">View MathML</a>

ratio


1ctf

11,753,426

64,997,101

0.18

1e68

9,039,397

64,541,841

0.14

1eh2

7,332,361

65,453,961

0.11

1khm

22,047,014

222,193,740

0.10

1nkl

7,966,008

67,995,291

0.12

1pgb

13,465,834

63,636,121

0.21


Total

71,604,689

548,818,055

0.13


For this table the RMSD threshold was 3.0 Å.

Fogolari et al. Algorithms for Molecular Biology 2012 7:16   doi:10.1186/1748-7188-7-16

Open Data