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Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity

Koji Kadota email, Yuji Nakai email and Kentaro Shimizu email

Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan

author email corresponding author email

Algorithms for Molecular Biology 2009, 4:7doi:10.1186/1748-7188-4-7

Published: 22 April 2009

Additional files

Additional File 1:

Detailed information for Datasets 3–38.

Format: DOC Size: 801KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional File 2:

POG values for PLIER-, VSN-, mmgMOS-, MBEI-, GCRMA-, MAS-, RMA-, and DFW-preprocessed data. Legends are the same as given in Figure 1.

Format: PDF Size: 84KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional File 3:

R-code for analyzing Dataset 4.

Format: TXT Size: 30KB Download file


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