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Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity

Koji Kadota^*, Yuji Nakai and Kentaro Shimizu

* Corresponding author: Koji Kadota kadota@bi.a.u-tokyo.ac.jp

Algorithms for Molecular Biology 2009, 4:7 doi:10.1186/1748-7188-4-7

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A normalization strategy for comparing tag count data

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Density based pruning for identification of differentially expressed genes from microarray data

Jianjun Hu, Jia Xu BMC Genomics 2010, 11(Suppl 2):S3 (2 November 2010)

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Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray

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