An image processing approach to computing distances between RNA secondary structures dot plots

doi:10.1186/1748-7188-4-4

Algorithms for Molecular Biology

Volume 4

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Ivry T
Michal S
Avihoo A
Sapiro G
Barash D

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Michal S
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Sapiro G
Barash D
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An image processing approach to computing distances between RNA secondary structures dot plots

Tor Ivry¹ , Shahar Michal¹ , Assaf Avihoo¹ , Guillermo Sapiro² and Danny Barash¹

¹Department of Computer Science, Ben-Gurion University, Beersheba, Israel

²Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, USA

author email corresponding author email

Algorithms for Molecular Biology 2009, 4:4doi:10.1186/1748-7188-4-4


Published:	9 February 2009

Additional files

Additional file 1:

Dataset of ribosomal RNA fragments. A supplementary file containing a dataset of ribosomal RNA fragments of thermus thermophilus HB8. The dataset is based on the experiment described in [39]. It contains 21 fragments that are used for testing the new method introduced here for measuring distances between RNA secondary structures and comparing it with traditional methods.

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