Table 2 |
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|
Formation of blocks based on the interpretation of prototype profiles and identification of corresponding markers. |
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| Block |
Prototypes |
# markers |
Marker characteristics |
Identified wound markers |
Prototype |
|
|
|||||
| A |
01 – 10 |
250 |
Accumulation in wild type plants after wounding |
JA-Ile (m/z 322) |
9 |
| dn-OPDA (m/z 263) |
8 |
||||
| OPC-4 (formate adduct, m/z 283) |
5 |
||||
| JA (m/z 209) |
5 |
||||
| OPDA (m/z 291) |
2 |
||||
| OH-JA-Ile (m/z 338) |
1 |
||||
| OH-JA (m/z 225) |
1 |
||||
| COOH-JA-Ile (m/z 352) |
1 |
||||
| B |
11 – 12 |
29 |
Accumulation in wt control plants |
-- |
-- |
| C |
13 – 17 |
112 |
Mainly indifferent |
-- |
-- |
| D |
18 – 19 |
26 |
Accumulation in mutant control plants |
COOH-22:0 (m/z 369) |
19 |
| OH-22:0 (m/z 355) |
19 |
||||
| OH-24:0 (m/z 383) |
19 |
||||
| OH-26:0 (m/z 411) |
19 |
||||
| E |
20 – 24 |
58 |
Accumulation in mutant plants after wounding |
HHT (m/z 265) |
21 |
| HOT (m/z 293) |
22 |
||||
| KOT (m/z 291) |
22 |
||||
| F |
25 – 33 |
362 |
Delayed accumulation in mutant plants after wounding |
-- |
-- |
Meinicke et al. Algorithms for Molecular Biology 2008 3:9 doi:10.1186/1748-7188-3-9 |
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