References

  1. Dettmer K, Aronov PA, Hammock BD: Mass spectrometry-based metabolomics.

    Mass Spectrom Rev 2007 , 26:51-78. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  2. Shulaev V, Cortes D, Miller G, Mittler R: Metabolomics for plant stress response.

    Physiologia Plantarum 2008 , 132(2):199-208. PubMed Abstract | Publisher Full Text OpenURL

  3. Guy C, Kaplan F, Kopka J, Selbig J, Hincha DK: Metabolomics of temperature stress.

    Physiologia Plantarum 2008 , 132(2):220-235. PubMed Abstract | Publisher Full Text OpenURL

  4. Sanchez DH, Siahpoosh MR, Roessner U, Udvardi M, Kopka J: Plant metabolomics reveals conserved and divergent metabolic responses to salinity.

    Physiologia Plantarum 2008 , 132(2):209-219. PubMed Abstract | Publisher Full Text OpenURL

  5. Gray GR, Heath D: A global reorganization of the metabolome in Arabidopsis during cold acclimation is revealed by metabolic fingerprinting.

    Physiologia Plantarum 2005 , 124(2):236-248. OpenURL

  6. Tarpley L, Duran A, Kebrom T, Sumner L: Biomarker metabolites capturing the metabolite variance present in a rice plant developmental period.

    BMC Plant Biol 2005 , 5:8. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  7. Aharoni A, Ric de Vos C, Verhoeven H, Maliepaard C, Kruppa G, Bino R, Goodenowe D: Nontargeted metabolome analysis by use of Fourier Transform Ion Cyclotron Mass Spectrometry.

    OMICS 2002 , 6:217-234. PubMed Abstract | Publisher Full Text OpenURL

  8. Fiehn O, Kopka J, Dörmann P, Altmann T, Trethewey R, Willmitzer L: Metabolite profiling for plant functional genomics.

    Nat Biotechnol 2000 , 18:1157-1161. PubMed Abstract | Publisher Full Text OpenURL

  9. Steinfath M, Groth D, Lisec J, Selbig J: Metabolite profile analysis: from raw data to regression and classification.

    Physiologia Plantarum 2008 , 132(2):150-161. PubMed Abstract | Publisher Full Text OpenURL

  10. Bhalla R, Narasimhan K, Swarup S: Metabolomics and its role in understanding cellular responses in plants.

    Plant Cell Rep 2005 , 24(10):562-571. PubMed Abstract | Publisher Full Text OpenURL

  11. Jiang D, Tang C, Zhang A: Cluster Analysis for Gene Expression Data: A Survey.

    IEEE Transactions on Knowledge and Data Engineering 2004 , 16(11):1370-1386. OpenURL

  12. Fiehn O: Metabolomics-the link between genotypes and phenotypes.

    Plant Mol Biol 2002 , 48(1–2):155-171. PubMed Abstract | Publisher Full Text OpenURL

  13. Wiklund S, Johansson E, Sjöström L, Mellerowicz E, Edlund U, Shockcor J, Gottfries J, Moritz T, Trygg J: Visualization of GC/TOF-MS-based metabolomics data for identification of biochemically interesting compounds using OPLS class models.

    Anal Chem 2008 , 80:115-122. PubMed Abstract | Publisher Full Text OpenURL

  14. Pohjanen E, Thysell E, Lindberg J, Schuppe-Koistinen I, Moritz T, Jonsson P, Antti H: Statistical multivariate metabolite profiling for aiding biomarker pattern detection and mechanistic interpretations in GC/MS based metabolomics.

    Metabolomics 2006 , 2(4):257-268. OpenURL

  15. Jain AK, Dubes RC: Algorithms for clustering data. Upper Saddle River, NJ, USA: Prentice-Hall, Inc; 1988. OpenURL

  16. Kohonen T: Self-Organizing Maps. Secaucus, NJ, USA: Springer-Verlag New York, Inc; 2001. OpenURL

  17. Graepel T, Burger M, Obermayer K: Deterministic Annealing for Topographic Vector Quantization and Self-Organising Maps.

    In Proceedings of the Workshop on Self-Organizing Maps (WSOM '97) Edited by: Kohonen T. 1997 , 345-350. OpenURL

  18. Heskes T, Kappen B: Error potentials for self-organization. In International Conference on Neural Networks. Volume 3. San Francisco, New York: IEEE; 1993:1219-1223. OpenURL

  19. Wasternack C, Stenzel I, Hause B, Hause G, Kutter C, Maucher H, Neumerkel J, Feussner I, Miersch O: The wound response in tomato-role of jasmonic acid.

    J Plant Physiol 2006 , 163:297-306. PubMed Abstract | Publisher Full Text OpenURL

  20. Leon J, Rojo E, Sanchez-Serrano J: Wound signalling in plants.

    J Exp Bot 2001 , 52:1-9. PubMed Abstract | Publisher Full Text OpenURL

  21. Wasternack C: Jasmonates: an update on biosynthesis, signal transduction and action in plant stress response, growth and development.

    Ann Bot 2007 , 100:681-697. PubMed Abstract | Publisher Full Text OpenURL

  22. Reymond P, Weber H, Damond M, Farmer E: Differential gene expression in response to mechanical wounding and insect feeding in Arabidopsis.

    Plant Cell 2000 , 12:707-720. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  23. Glauser G, Grata E, Dubugnon L, Rudaz S, Farmer E, Wolfender J: Spatial and temporal dynamics of Jasmonate synthesis and accumulation in Arabidopsis in response to wounding.

    J Biol Chem 2008. PubMed Abstract | Publisher Full Text OpenURL

  24. The Arabidosis Genome Iniative: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

    Nature 2000 , 408:796-815. PubMed Abstract | Publisher Full Text OpenURL

  25. Schilmiller A, Howe G: Systemic signaling in the wound response.

    Curr Opin Plant Biol 2005 , 8:369-377. PubMed Abstract | Publisher Full Text OpenURL

  26. von Malek B, Graaff E, Schneitz K, Keller B: The Arabidopsis male-sterile mutant dde 2–2 is defective in the ALLENE OXIDE SYNTHASE gene encoding one of the key enzymes of the jasmonic acid biosynthesis pathway.

    Planta 2002 , 216:187-192. PubMed Abstract | Publisher Full Text OpenURL

  27. Stenzel I, Hause B, Maucher H, Pitzschke A, Miersch O, Ziegler J, Ryan C, Wasternack C: Allene oxide cyclase dependence of the wound response and vascular bundle-specific generation of jasmonates in tomato – amplification in wound signalling.

    Plant J 2003 , 33:577-589. PubMed Abstract | Publisher Full Text OpenURL

  28. Fiehn O: Protocol for Plant Leaf Metabolite Profiling. [http://www.mpimp-golm.mpg.de/fiehn/forschung/blatt-protokoll-e.html]

  29. Gibbons JD: Nonparametric Statistical Inference. 2nd edition. New York and Basel: Marcel Dekker, Inc; 1985. OpenURL

  30. Weber H, Vick B, Farmer E: Dinor-oxo-phytodienoic acid: a new hexadecanoid signal in the jasmonate family.

    Proc Natl Acad Sci USA 1997 , 94:10473-10478. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  31. Miersch O, Neumerkel J, Dippe M, Stenzel I, Wasternack C: Hydroxylated jasmonates are commonly occurring metabolites of jasmonic acid and contribute to a partial switch-off in jasmonate signaling.

    New Phytol 2008 , 177:114-127. PubMed Abstract | Publisher Full Text OpenURL

  32. Grata E, Boccard J, Glauser G, Carrupt P, Farmer E, Wolfender J, Rudaz S: Development of a two-step screening ESI-TOF-MS method for rapid determination of significant stress-induced metabolome modifications in plant leaf extracts: the wound response in Arabidopsis thaliana as a case study.

    J Sep Sci 2007 , 30:2268-2278. PubMed Abstract | Publisher Full Text OpenURL

  33. Delker C, Stenzel I, Hause B, Miersch O, Feussner I, Wasternack C: Jasmonate biosynthesis in Arabidopsis thaliana-enzymes, products, regulation.

    Plant Biol 2006 , 8:297-306. PubMed Abstract | Publisher Full Text OpenURL