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A weighted average difference method for detecting differentially expressed genes from microarray data

Koji Kadota email, Yuji Nakai email and Kentaro Shimizu email

Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan

author email corresponding author email

Algorithms for Molecular Biology 2008, 3:8doi:10.1186/1748-7188-3-8

Published: 26 June 2008

Additional files

Additional file 1:

Detailed information for Datasets 3–38.

Format: DOC Size: 2.4MB Download file

This file can be viewed with: Microsoft Word Viewer

Additional file 2:

R-code for analyzing Dataset 1.

Format: TXT Size: 19KB Download file

Additional file 3:

R-code for analyzing Dataset 2.

Format: TXT Size: 40KB Download file

Additional file 4:

Average expression vectors and the results of outlier detection for Datasets 3–26. Sheet 1: Average expression vectors are provided. Sheet 2: For each of the original average expression vectors, an outlier vector (consisting of 1 for over-expressed outliers, -1 for under-expressed outliers, and 0 for non-outliers) is provided. This sheet does not contain "-1".

Format: XLS Size: 14.4MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 5:

Average expression vectors and the results of outlier detection for Datasets 27–38. Sheet 1: Average expression vectors are provided. Sheet 2: For each of the original average expression vectors, an outlier vector (consisting of 1 for over-expressed outliers, -1 for under-expressed outliers, and 0 for non-outliers) is provided. This sheet does not contain "-1".

Format: XLS Size: 8.2MB Download file

This file can be viewed with: Microsoft Excel Viewer


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