|
Sum-of-pairs scores on DIRMBASE 1 |
|||||
| Method (DNA) |
REF1 |
REF2 |
REF3 |
REF4 |
Total |
|
|
|||||
| DIALIGN-TX |
94.38 |
92.85 |
95.44 |
95.70 |
94.59 |
| DIALIGN-T 0.2.2 |
64.00-- |
61.22-- |
64.96-- |
65.24-- |
63.85-- |
| DIALIGN 2.2 |
92.61- |
91.10- |
94.62- |
94.13- |
93.12-- |
| CLUSTAL W2 |
06.79-- |
08.27-- |
18.51-- |
29.09-- |
15.66-- |
| T-COFFEE 5.56 |
14.71-- |
18.88-- |
32.08-- |
43.39-- |
27.62-- |
| POA V2 |
32.03-- |
27.40-- |
28.78-- |
32.18-- |
30.10-- |
| MAFFT 6.240 L-INSi |
52.40-- |
48.81-- |
49.77-- |
57.47-- |
52.36-- |
| MAFFT 6.240 E-INSi |
92.420 |
84.15-- |
87.91- |
89.36- |
88.46-- |
| MUSCLE 3.7 |
48.17-- |
54.40-- |
56.57-- |
60.24-- |
56.84-- |
| PROBCONSRNA 1.10 |
13.00-- |
12.94-- |
20.28-- |
32.56-- |
19.69-- |
|
Average sum-of-pair scores (SPS) of the benchmarked programs on the core blocks of DIRMBASE 1. The symbols are analogous to Table 1. | |||||
Subramanian et al. Algorithms for Molecular Biology 2008 3:6 doi:10.1186/1748-7188-3-6 |
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