A scoring matrix approach to detecting miRNA target sites

doi:10.1186/1748-7188-3-3

Algorithms for Molecular Biology

Volume 3

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A scoring matrix approach to detecting miRNA target sites

Simon Moxon , Vincent Moulton and Jan T Kim

School of Computing Sciences, University of East Anglia, Norwich, NR4 7TJ, UK

author email corresponding author email

Algorithms for Molecular Biology 2008, 3:3doi:10.1186/1748-7188-3-3


Published:	31 March 2008

Additional files

Additional file 3:

Raw result files. Raw SBM results files, alignments of miRNA targets used in the analysis and a list of overlapping targets predicted by both SBM and miRanda.

Format: ZIP Size: 10.4MB Download file

Additional file 1:

tableS1 – SBM comparison with miRanda. Full results of the SBM comparison with miRanda for each of the four miRNAs tested.

Format: PDF Size: 50KB Download file

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Additional file 2:

tableS2 – Number of overlapping predictions. Summary table showing the number of target regions predicted by SBM and miRanda using default parameters and their overlap.

Format: PDF Size: 53KB Download file

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