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Figure 2.
Two tree topologies: The tree T1 (left) representing – up to unsafe branches – the "Topology I trees" was computed for our sequence family 
using CLUSTALW, and T2 (right) representing – up to unsafe branches – the "Topology II trees" was computed using DIALIGN. The bootstrapping frequencies are shown for the safe branches of each tree. Note that the safe branches in T1 separating{S17, S18}, {S16, S17, S18, S19}, and {S20, S21, S22}, respectively, from the sequences disapper in T2.
using CLUSTALW, and T2 (right) representing – up to unsafe branches – the "Topology II trees" was computed using DIALIGN. The bootstrapping frequencies are shown for the safe branches of each tree. Note that the safe branches in T1 separating{S17, S18}, {S16, S17, S18, S19}, and {S20, S21, S22}, respectively, from the sequences disapper in T2.Wagner et al. Algorithms for Molecular Biology 2008 3:15 doi:10.1186/1748-7188-3-15
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