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Syntenator multiple gene order alignments |
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| Alignment order: MRHD |
Mouse |
Rat |
Human |
Dog |
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| Number of blocks |
304 |
301 |
289 |
328 |
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| Mean length |
48.2 |
41.4 |
44.8 |
42.7 |
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| Genes in alignments |
14665 (60%) |
12451 (53%) |
12933 (56%) |
14018 (77%) |
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| Block size in Mb |
1820.1 |
1832.0 |
2416.6 |
1694.4 |
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| Alignment order: HDMR |
Mouse |
Rat |
Human |
Dog |
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| Number of blocks |
367 |
397 |
345 |
331 |
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| Mean length |
42.6 |
45.7 |
42.6 |
36.3 |
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| Genes in alignments |
15650 (64%) |
18151 (78%) |
14698 (63%) |
12036 (66%) |
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| Block size in Mb |
1772.6 |
1923.6 |
2438.4 |
1815.4 |
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Two alternative Syntenator multiple gene order alignments of mouse (M), rat (R), human (H) and dog (D) are shown to demonstrate the dependence of the alignment outcome on the alignment order of species. The proportion of genes in alignments relative to the total gene set is shown in percentage. The mean length of a block is the ratio of Genes in alignments/Number of blocks. | ||||
Rödelsperger and Dieterich Algorithms for Molecular Biology 2008 3:14 doi:10.1186/1748-7188-3-14 |
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