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Resolution: standard / high Figure 3.
A network representing a circular distance. A circular distance d on the set {u, v, ..., z} for which NeighborNet using only the Q-criterion employed in NJ to cluster elements would be inconsistent. Distances are given by shortest paths in the network. The pairs u, v and x, y would be clustered together first and then the pair z, w. However it is not hard to show that z and w are not adjacent in any ordering of {u, v, ..., z} that is compatible with d.
Bryant et al. Algorithms for Molecular Biology 2007 2:8 doi:10.1186/1748-7188-2-8 |