Evaluating deterministic motif significance measures in protein databases

Pedro Gabriel Ferreira and Paulo J Azevedo

Department of Informatics, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal

author email corresponding author email

Algorithms for Molecular Biology 2007, 2:16doi:10.1186/1748-7188-2-16


Published:	24 December 2007

Additional files

Additional File 1:

Correlation Matrices for four different datasets. Correlation matrices for the 14 measures. The first three figures correspond to the datasets with sensitivity values for the generated motifs of: (a) less than 33%; (b) between 33% and 66%; (c) greater than 66%. Figure (d) corresponds to the evaluation of the prosite motifs. Due to the symmetric nature of the matrices only the lower triangular part is presented.

Format: PS Size: 1MB Download file

Additional File 2:

Scripts and Datasets. This file contains the sequence datasets (synthetic and real) and the evaluated motifs. This data is separated according to the tables where it is presented and discussed. It also contains script programs (in perl language) developed for this work.

Format: ZIP Size: 19.2MB Download file