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Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules

Valentina Boeva*, Julien Clément, Mireille Régnier, Mikhail A Roytberg and Vsevolod J Makeev

Algorithms for Molecular Biology 2007, 2:13 doi:10.1186/1748-7188-2-13

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Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data

Gregory Nuel, Leslie Regad, Juliette Martin, Anne-Claude Camproux Algorithms for Molecular Biology 2010, 5:15 (26 January 2010)

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Research article   Open Access

Intergenic, gene terminal, and intragenic CpG islands in the human genome

Yulia A Medvedeva, Marina V Fridman, Nina J Oparina, Dmitry B Malko, Ekaterina O Ermakova, Ivan V Kulakovskiy, Andreas Heinzel, Vsevolod J Makeev BMC Genomics 2010, 11:48 (19 January 2010)

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Methodology article   Open Access

Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research

Yoginder S Dandass, Shane C Burgess, Mark Lawrence, Susan M Bridges BMC Bioinformatics 2008, 9:197 (15 April 2008)

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