Figure 8.

a) An optimal local 5-map of P-element over P-repressor and reciprocally (BLAST substitution matrix). b) An optimal global 15-map of P-element over P-repressor (Identity substitution matrix). c) An optimal global 24-map of P-repressor over P-element (Identity substitution matrix). Diagonals with average score (here identity proportion) smaller than 0.6 were removed from the global N-maps.