  ResearchPhyloScan: identification of transcription factor binding sites using cross-species evidenceC Steven Carmack1 1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, USA 2 Pacific Northwest National Laboratory, Richland, WA 99352, USA 3 Departrnent of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, USA 4 Division of Applied Mathematics, Brown University, Providence, RI 02912, USA
Algorithms for Molecular Biology 2007, 2:1doi:10.1186/1748-7188-2-1
Additional filesAdditional file 1: Additional Information. This file includes legends for Supplementary Tables 2–4, which are included as additional files (see below). It includes samples of calculations described in Methods. Format: DOC Size: 40KB Download file This file can be viewed with: Microsoft Word Viewer Additional file 3: Supplementary Table 3. This table lists the sites and the q-values for each of the Crp binding site prediction experiments in Table 1 of the text. Format: XLS Size: 103KB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 4: Supplementary Table 4. This table lists the sites and the q-values for each of the PurR binding site prediction experiments in Table 1 of the text. Format: XLS Size: 41KB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 2: Supplementary Table 2. This table lists the orthologs and the orthologous intergenic regions used in this study. Format: XLS Size: 838KB Download file This file can be viewed with: Microsoft Excel Viewer |
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