Table 5

Comparison of STM to competing clustering methods for clusters with 9 or more members
Method
 Number
 Size
 Discard(%)
 Function
 Location
STM
 45
 52.4
 11.5
 16.8
 9.01
Maximal clique
 N/A
 N/A
 N/A
 N/A
 N/A
Quasi clique
 46
 16.7
 86.7
 15.3
 9.34
Samantha
 17
 12.3
 93.3
 15.9
 7.65
Minimum cut
 44
 24.3
 55.0
 14.8
 8.78
Bwtweenness cut
 78
 14.4
 50.5
 11.3
 6.05
MCL
 55
 16.7
 69.4
 11.5
 5.42

Comparison of STM to competing clustering methods for the yeast protein-protein interaction data set for clusters with 9 or more members. The Maximal clique does not identify clusters with 9 or more members. The footnote is the same to Table 4.

Hwang et al. Algorithms for Molecular Biology 2006 1:24   doi:10.1186/1748-7188-1-24