|
A Simple Motif |
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| Symbols |
Motif |
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|
|
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| A |
0 |
0 |
0 |
4 |
1 |
1 |
7 |
0 |
5 |
1 |
0 |
2 |
0 |
2 |
0 |
0 |
0 |
| C |
10 |
0 |
1 |
2 |
3 |
5 |
0 |
7 |
0 |
4 |
2 |
5 |
5 |
1 |
9 |
10 |
0 |
| G |
0 |
10 |
9 |
4 |
5 |
3 |
2 |
3 |
0 |
3 |
1 |
1 |
4 |
1 |
1 |
0 |
10 |
| T |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
5 |
2 |
7 |
2 |
1 |
6 |
0 |
0 |
0 |
|
|
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| IUPAC |
C |
G |
S |
V |
N |
N |
D |
S |
W |
N |
B |
N |
B |
N |
S |
C |
G |
|
The binding sites for the transcription factor GAL4 in S. cerevisiae satisfy this motif [1]. Rows 2–5 show the profile (the frequency of observing a DNA base in a given position). The last row shows the corresponding pattern over the IUPAC alphabet. | |||||||||||||||||
Zhang and Zaki Algorithms for Molecular Biology 2006 1:22 doi:10.1186/1748-7188-1-22 |
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