Table 1

Pseudo periodic repeats of 1SRY (matrix:blosum62, gap penalty: -4)
Unit
 Pseudo-periodic unit
 Length
 Similarity with previous unit
1
 MVDLKRLR
 8
2
 QEPEVFHR
 8
 -5
3
 AIREKGVA
 8
 -10
4
 LDLEALLA
 8
 -1
5
 LDREVQEL
 8
 7
6
 KKRLQEVQ
 8
 6
7
 TERNQVA
 7
 6
8
 KRVPKAP
 7
 -4
9
 PEEKEAL
 7
 -2
10
 IARGKAL
 7
 3
11
 GEEAKRL
 7
 3
12
 EEALRE
 6
 10
13
 KEARLE
 6
 12
14
 ALLLQV
 6
 -6
15
 PLPP
 4
 -8

Liu and Wang Algorithms for Molecular Biology 2006 1:2   doi:10.1186/1748-7188-1-2