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Tree-average distances on certain phylogenetic networks have their weights uniquely determined
Stephen J Willson Algorithms for Molecular Biology 2012, 7:13 (15 May 2012)
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Maximum Parsimony on Phylogenetic Networks
Lavanya Kannan, Ward C Wheeler Algorithms for Molecular Biology 2012, 7:9 (2 May 2012)
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Reconciling taxonomy and phylogenetic inference: formalism and algorithms for describing discord and inferring taxonomic roots
Frederick A Matsen, Aaron Gallagher Algorithms for Molecular Biology 2012, 7:8 (2 May 2012)
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Fractal MapReduce decomposition of sequence alignment
Jonas S Almeida, Alexander Gruneberg, Wolfgang Maass, Susana Vinga Algorithms for Molecular Biology 2012, 7:12 (2 May 2012)
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Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations
Tapio Pahikkala, Sebastian Okser, Antti Airola, Tapio Salakoski, Tero Aittokallio Algorithms for Molecular Biology 2012, 7:11 (2 May 2012)
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Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis
Susana Vinga, Alexandra M Carvalho, Alexandre P Francisco, Luis MS Russo, Jonas S Almeida Algorithms for Molecular Biology 2012, 7:10 (2 May 2012)
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A polynomial time algorithm for calculating the probability of a ranked gene tree given a species tree
Tanja Stadler, James H. Degnan Algorithms for Molecular Biology 2012, 7:7 (30 April 2012)
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Computing evolutionary distinctiveness indices in large scale analysis
Iain Martyn, Tyler S Kuhn, Arne O Mooers, Vincent Moulton, Andreas Spillner Algorithms for Molecular Biology 2012, 7:6 (13 April 2012)
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A normalization strategy for comparing tag count data
Koji Kadota, Tomoaki Nishiyama, Kentaro Shimizu Algorithms for Molecular Biology 2012, 7:5 (5 April 2012)
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TS-AMIR: a topology string alignment method for intensive rapid protein structure comparison
Jafar Razmara, Safaai Deris, Sepideh Parvizpour Algorithms for Molecular Biology 2012, 7:4 (15 February 2012)
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MRL and SuperFine+MRL: new supertree methods
Nam Nguyen, Siavash Mirarab, Tandy Warnow Algorithms for Molecular Biology 2012, 7:3 (26 January 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements
Stefan Enroth, Claes R Andersson, Robin Andersson, Claes Wadelius, Mats G Gustafsson, Jan Komorowski Algorithms for Molecular Biology 2012, 7:2 (16 January 2012)
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QTL/microarray approach using pathway information
Hirokazu Matsuda, Yukio Taniguchi, Hiroaki Iwaisaki Algorithms for Molecular Biology 2012, 7:1 (15 January 2012)
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A Partial Least Squares based algorithm for parsimonious variable selection
Tahir Mehmood, Harald Martens, Solve Sæbø, Jonas Warringer, Lars Snipen Algorithms for Molecular Biology 2011, 6:27 (5 December 2011)
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ViennaRNA Package 2.0
Ronny Lorenz, Stephan H Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F Stadler, Ivo L Hofacker Algorithms for Molecular Biology 2011, 6:26 (24 November 2011)
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Comparative analysis of the quality of a global algorithm and a local algorithm for alignment of two sequences
Valery O Polyanovsky, Mikhail A Roytberg, Vladimir G Tumanyan Algorithms for Molecular Biology 2011, 6:25 (27 October 2011)
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Random generation of RNA secondary structures according to native distributions
Markus E Nebel, Anika Scheid, Frank Weinberg Algorithms for Molecular Biology 2011, 6:24 (12 October 2011)
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ReCoil - an algorithm for compression of extremely large datasets of dna data
Vladimir Yanovsky Algorithms for Molecular Biology 2011, 6:23 (11 October 2011)
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Multi-membership gene regulation in pathway based microarray analysis
Stelios P Pavlidis, Annette M Payne, Stephen M Swift Algorithms for Molecular Biology 2011, 6:22 (22 September 2011)
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Exploiting bounded signal flow for graph orientation based on cause–effect pairs
Britta Dorn, Falk Hüffner, Dominikus Krüger, Rolf Niedermeier, Johannes Uhlmann Algorithms for Molecular Biology 2011, 6:21 (25 August 2011)
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Reducing the worst case running times of a family of RNA and CFG problems, using Valiant's approach
Shay Zakov, Dekel Tsur, Michal Ziv-Ukelson Algorithms for Molecular Biology 2011, 6:20 (18 August 2011)
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Prediction of plant promoters based on hexamers and random triplet pair analysis
A K M Azad, Saima Shahid, Nasimul Noman, Hyunju Lee Algorithms for Molecular Biology 2011, 6:19 (28 June 2011)
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DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach
Akdes Serin, Martin Vingron Algorithms for Molecular Biology 2011, 6:18 (23 June 2011)
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A new, fast algorithm for detecting protein coevolution using maximum compatible cliques
Alex Rodionov, Alexandr Bezginov, Jonathan Rose, Elisabeth RM Tillier Algorithms for Molecular Biology 2011, 6:17 (14 June 2011)
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Efficient unfolding pattern recognition in single molecule force spectroscopy data
Bill Andreopoulos, Dirk Labudde Algorithms for Molecular Biology 2011, 6:16 (6 June 2011)
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