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An enhancement of binary particle swarm optimization for gene selection in classifying cancer classes
Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, Michifumi Yoshioka, Afnizanfaizal Abdullah, Zuwairie Ibrahim Algorithms for Molecular Biology 2013, 8:15 (24 April 2013)
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LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search
Sebastian Will, Michael F. Siebauer, Steffen Heyne, Jan Engelhardt, Peter F. Stadler, Kristin Reiche, Rolf Backofen Algorithms for Molecular Biology 2013, 8:14 (20 April 2013)
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Unrooted unordered homeomorphic subtree alignment of RNA trees
Nimrod Milo, Shay Zakov, Erez Katzenelson, Eitan Bachmat, Yefim Dinitz, Michal Ziv-Ukelson Algorithms for Molecular Biology 2013, 8:13 (16 April 2013)
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Reconciliation and local gene tree rearrangement can be of
mutual profit
Thi Hau Nguyen, Vincent Ranwez, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Jean-Philippe Doyon, Vincent Berry Algorithms for Molecular Biology 2013, 8:12 (8 April 2013)
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Incompatible quartets, triplets, and characters
Brad Shutters, Sudheer Vakati, David Fernández-Baca Algorithms for Molecular Biology 2013, 8:11 (1 April 2013)
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Gene Ontology consistent protein function prediction: the FALCON algorithm applied to six eukaryotic genomes
Yiannis AI Kourmpetis, Aalt DJ van Dijk, Cajo JF ter Braak Algorithms for Molecular Biology 2013, 8:10 (27 March 2013)
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Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell
Anirban Bhar, Martin Haubrock, Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Edgar Wingender Algorithms for Molecular Biology 2013, 8:9 (23 March 2013)
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Resolving spatial inconsistencies in chromosome conformation measurements
Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford Algorithms for Molecular Biology 2013, 8:8 (9 March 2013)
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Ultrametric networks: a new tool for phylogenetic analysis
Alberto Apostolico, Matteo Comin, Andres Dress, Laxmi Parida Algorithms for Molecular Biology 2013, 8:7 (5 March 2013)
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DCJ-Indel sorting revisited
Phillip EC Compeau Algorithms for Molecular Biology 2013, 8:6 (1 March 2013)
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Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles?
Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi, Ming Li Algorithms for Molecular Biology 2013, 8:5 (25 February 2013)
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Configurable pattern-based evolutionary biclustering of gene expression data
Beatriz Pontes, Raúl Giráldez, Jesús S Aguilar-Ruiz Algorithms for Molecular Biology 2013, 8:4 (23 February 2013)
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A mixed integer linear programming model to reconstruct phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion
Daniele Catanzaro, Ramamoorthi Ravi, Russell Schwartz Algorithms for Molecular Biology 2013, 8:3 (23 January 2013)
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Using graph models to find transcription factor modules: the hitting set problem and an exact algorithm
Songjian Lu, Xinghua Lu Algorithms for Molecular Biology 2013, 8:2 (16 January 2013)
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The difficulty of protein structure alignment under the RMSD
Shuai Cheng Li Algorithms for Molecular Biology 2013, 8:1 (4 January 2013)
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On the group theoretical background of assigning stepwise mutations onto phylogenies
Mareike Fischer, Steffen Klaere, Minh Anh Thi Nguyen, Arndt von Haeseler Algorithms for Molecular Biology 2012, 7:36 (15 December 2012)
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Invariant based quartet puzzling
Joseph P Rusinko, Brian Hipp Algorithms for Molecular Biology 2012, 7:35 (6 December 2012)
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Alignment-free phylogeny of whole genomes using underlying subwords
Matteo Comin, Davide Verzotto Algorithms for Molecular Biology 2012, 7:34 (6 December 2012)
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The space of phylogenetic mixtures for equivariant models
Marta Casanellas, Jesús Fernández-Sánchez, Anna M Kedzierska Algorithms for Molecular Biology 2012, 7:33 (28 November 2012)
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Towards a practical O(nlogn) phylogeny algorithm
Jakub Truszkowski, Yanqi Hao, Daniel G Brown Algorithms for Molecular Biology 2012, 7:32 (26 November 2012)
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Gene tree correction for reconciliation and species tree inference
Krister M Swenson, Andrea Doroftei, Nadia El-Mabrouk Algorithms for Molecular Biology 2012, 7:31 (20 November 2012)
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Adaptive efficient compression of genomes
Sebastian Wandelt, Ulf Leser Algorithms for Molecular Biology 2012, 7:30 (12 November 2012)
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Distributional fold change test – a statistical approach for detecting differential expression in microarray experiments
Vadim Farztdinov, Fionnuala McDyer Algorithms for Molecular Biology 2012, 7:29 (2 November 2012)
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On the combinatorics of sparsification
Fenix WD Huang, Christian M Reidys Algorithms for Molecular Biology 2012, 7:28 (22 October 2012)
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Separating metagenomic short reads into genomes via clustering
Olga Tanaseichuk, James Borneman, Tao Jiang Algorithms for Molecular Biology 2012, 7:27 (26 September 2012)
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