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Articles in Volume 5 | Research
Refining transcriptional regulatory networks using network evolutionary models and gene histories
Xiuwei Zhang, Bernard ME Moret
Algorithms for Molecular Biology 2010, 5:1 (4 January 2010)
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Research
Constructing majority-rule supertrees
Jianrong Dong, David Fernández-Baca, FR McMorris
Algorithms for Molecular Biology 2010, 5:2 (4 January 2010)
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Research
Phylogenetic comparative assembly
Peter Husemann, Jens Stoye
Algorithms for Molecular Biology 2010, 5:3 (4 January 2010)
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Research
Mimosa: Mixture model of co-expression to detect modulators of regulatory interaction
Matthew Hansen, Logan Everett, Larry Singh, Sridhar Hannenhalli
Algorithms for Molecular Biology 2010, 5:4 (4 January 2010)
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Research
Fast prediction of RNA-RNA interaction
Raheleh Salari, Rolf Backofen, S Cenk Sahinalp
Algorithms for Molecular Biology 2010, 5:5 (4 January 2010)
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Research
Back-translation for discovering distant protein homologies in the presence of frameshift mutations
Marta Gîrdea, Laurent Noé, Gregory Kucherov
Algorithms for Molecular Biology 2010, 5:6 (4 January 2010)
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Research
Linear-time protein 3-D structure searching with insertions and deletions
Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane
Algorithms for Molecular Biology 2010, 5:7 (4 January 2010)
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Research
A simulation study comparing supertree and combined analysis methods using SMIDGen
M Shel Swenson, François Barbançon, Tandy Warnow, C Randal Linder
Algorithms for Molecular Biology 2010, 5:8 (4 January 2010)
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Research
A tree-based method for the rapid screening of chemical fingerprints
Thomas G Kristensen, Jesper Nielsen, Christian NS Pedersen
Algorithms for Molecular Biology 2010, 5:9 (4 January 2010)
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Research
A markov classification model for metabolic pathways
Timothy Hancock, Hiroshi Mamitsuka
Algorithms for Molecular Biology 2010, 5:10 (4 January 2010)
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Research
Efficient algorithms for analyzing segmental duplications with deletions and inversions in genomes
Crystal L Kahn, Shay Mozes, Benjamin J Raphael
Algorithms for Molecular Biology 2010, 5:11 (4 January 2010)
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Research
FlexSnap: Flexible Non-sequential Protein Structure Alignment
Saeed Salem, Mohammed J Zaki, Chris Bystroff
Algorithms for Molecular Biology 2010, 5:12 (4 January 2010)
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Research
A simple, practical and complete O-time Algorithm for RNA folding using the Four-Russians Speedup
Yelena Frid, Dan Gusfield
Algorithms for Molecular Biology 2010, 5:13 (4 January 2010)
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Research
ANMM4CBR: a case-based reasoning method for gene expression data classification
Bangpeng Yao, Shao Li
Algorithms for Molecular Biology 2010, 5:14 (6 January 2010)
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Research
Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data
Gregory Nuel, Leslie Regad, Juliette Martin, Anne-Claude Camproux
Algorithms for Molecular Biology 2010, 5:15 (26 January 2010)
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Software article
Jane: a new tool for the cophylogeny reconstruction problem
Chris Conow, Daniel Fielder, Yaniv Ovadia, Ran Libeskind-Hadas
Algorithms for Molecular Biology 2010, 5:16 (3 February 2010)
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Research
Association of repeatedly measured intermediate risk factors for complex diseases with high dimensional SNP data
Sandra Waaijenborg, Aeilko H Zwinderman
Algorithms for Molecular Biology 2010, 5:17 (11 February 2010)
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Research
Robinson-Foulds Supertrees
Mukul S Bansal, J Gordon Burleigh, Oliver Eulenstein, David Fernández-Baca
Algorithms for Molecular Biology 2010, 5:18 (24 February 2010)
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Research
Distinguishing between hot-spots and melting-pots of genetic diversity using haplotype connectivity
Binh Nguyen, Andreas Spillner, Brent C Emerson, Vincent Moulton
Algorithms for Molecular Biology 2010, 5:19 (20 March 2010)
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Meeting report
Challenges in experimental data integration within genome-scale metabolic models
Pierre-Yves Bourguignon, Areejit Samal, François Képès, Jürgen Jost, Olivier C Martin
Algorithms for Molecular Biology 2010, 5:20 (22 April 2010)
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