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On the optimality of the neighbor-joining algorithm
Kord Eickmeyer, Peter Huggins, Lior Pachter, Ruriko Yoshida
Algorithms for Molecular Biology 2008, 3:5 (30 April 2008)
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Research
Protein sequence and structure alignments within one framework
Gundolf Schenk, Thomas Margraf, Andrew E. Torda
Algorithms for Molecular Biology 2008, 3:4 (1 April 2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research
A scoring matrix approach to detecting miRNA target sites
Simon Moxon, Vincent Moulton, Jan T Kim
Algorithms for Molecular Biology 2008, 3:3 (31 March 2008)
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Research
Learning from positive examples when the negative class is undetermined- microRNA gene identification
Malik Yousef, Segun Jung, Louise C Showe, Michael K Showe
Algorithms for Molecular Biology 2008, 3:2 (28 January 2008)
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Research
Reconstructing phylogenies from noisy quartets in polynomial time with a high success probability
Gang Wu, Ming-Yang Kao, Guohui Lin, Jia-Huai You
Algorithms for Molecular Biology 2008, 3:1 (24 January 2008)
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Research
Evaluating deterministic motif significance measures in protein databases
Pedro Gabriel Ferreira, Paulo J Azevedo
Algorithms for Molecular Biology 2007, 2:16 (24 December 2007)
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Research
Efficient and accurate P-value computation for Position Weight Matrices
Hélène Touzet, Jean-Stéphane Varré
Algorithms for Molecular Biology 2007, 2:15 (11 December 2007)
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Book report
Review of "Reconstructing Evolution: New mathematical and computational advances" edited by Olivier Gascuel and Mike Steel
Andreas Spillner
Algorithms for Molecular Biology 2007, 2:14 (6 November 2007)
[Abstract] [Full Text] [PDF]
Research
Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules
Valentina Boeva, Julien Clément, Mireille Régnier, Mikhail A Roytberg, Vsevolod J Makeev
Algorithms for Molecular Biology 2007, 2:13 (10 October 2007)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research
Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation
Rodrigo Gouveia-Oliveira, Anders G Pedersen
Algorithms for Molecular Biology 2007, 2:12 (3 October 2007)
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Research
Mapping sequences by parts
Gilles Didier, Carito Guziolowski
Algorithms for Molecular Biology 2007, 2:11 (19 September 2007)
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Software article
A basic analysis toolkit for biological sequences
Raffaele Giancarlo, Alessandro Siragusa, Enrico Siragusa, Filippo Utro
Algorithms for Molecular Biology 2007, 2:10 (18 September 2007)
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Research
Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail
Stefan Wolfsheimer, Bernd Burghardt, Alexander K Hartmann
Algorithms for Molecular Biology 2007, 2:9 (11 July 2007)
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Research
Consistency of the Neighbor-Net Algorithm
David Bryant, Vincent Moulton, Andreas Spillner
Algorithms for Molecular Biology 2007, 2:8 (28 June 2007)
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Research
Characteristics of predictor sets found using differential prioritization
Chia Huey Ooi, Madhu Chetty, Shyh Wei Teng
Algorithms for Molecular Biology 2007, 2:7 (4 June 2007)
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Research
RNAstrand: reading direction of structured RNAs in multiple sequence alignments
Kristin Reiche, Peter F Stadler
Algorithms for Molecular Biology 2007, 2:6 (31 May 2007)
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Research
GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data
Koji Kadota, Ryoko Araki, Yuji Nakai, Masumi Abe
Algorithms for Molecular Biology 2007, 2:5 (30 May 2007)
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Meeting report
Data Mining in Bioinformatics (BIOKDD)
Mohammed J Zaki, George Karypis, Jiong Yang
Algorithms for Molecular Biology 2007, 2:4 (11 April 2007)
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Research
A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories
Hui Yang, Srinivasan Parthasarathy, Duygu Ucar
Algorithms for Molecular Biology 2007, 2:3 (4 April 2007)
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Research
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter Ortoleva
Algorithms for Molecular Biology 2007, 2:2 (30 March 2007)
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