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 Review of Bioinformatics: A Computing Perspective edited by Shuba Gopal, Anne Haake, Rhys Price Jones and Paul Tymann Dae-Won Kim, Hong-Seog Park Algorithms for Molecular Biology 2009, 4:9 (24 June 2009) [Abstract] [Full Text] [PDF] Research
  A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series
Sara C Madeira, Arlindo L Oliveira Algorithms for Molecular Biology 2009, 4:8 (4 June 2009) [Abstract] [Provisional PDF] [PubMed] [Related articles] Research
  Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity Koji Kadota, Yuji Nakai, Kentaro Shimizu Algorithms for Molecular Biology 2009, 4:7 (22 April 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
 Evolving DNA motifs to predict GeneChip probe performance WB Langdon, AP Harrison Algorithms for Molecular Biology 2009, 4:6 (19 March 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
 A linear programming approach for estimating the structure of a sparse linear genetic network from transcript profiling data Sahely Bhadra, Chiranjib Bhattacharyya, Nagasuma R Chandra, I Saira Mian Algorithms for Molecular Biology 2009, 4:5 (24 February 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
 An image processing approach to computing distances between RNA secondary structures dot plots Tor Ivry, Shahar Michal, Assaf Avihoo, Guillermo Sapiro, Danny Barash Algorithms for Molecular Biology 2009, 4:4 (9 February 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
 Lossless filter for multiple repeats with bounded edit distance Pierre Peterlongo, Gustavo Akio Tominaga Sacomoto, Alair Pereira do Lago, Nadia Pisanti, Marie-France Sagot Algorithms for Molecular Biology 2009, 4:3 (30 January 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software article
 CHSMiner: a GUI tool to identify chromosomal homologous segments Zhen Wang, Guohui Ding, Zhonghao Yu, Lei Liu, Yixue Li Algorithms for Molecular Biology 2009, 4:2 (15 January 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
 Auto-validating von Neumann rejection sampling from small phylogenetic tree spaces Raazesh Sainudiin, Thomas York Algorithms for Molecular Biology 2009, 4:1 (7 January 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  HuMiTar: A sequence-based method for prediction of human microRNA targets Jishou Ruan, Hanzhe Chen, Lukasz Kurgan, Ke Chen, Chunsheng Kang, Peiyu Pu Algorithms for Molecular Biology 2008, 3:16 (22 December 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Short report
  Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family Holger Wagner, Burkhard Morgenstern, Andreas Dress Algorithms for Molecular Biology 2008, 3:15 (6 November 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software article
 Syntenator: Multiple gene order alignments with a gene-specific scoring function Christian Rödelsperger, Christoph Dieterich Algorithms for Molecular Biology 2008, 3:14 (6 November 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  Fast algorithms for computing sequence distances by exhaustive substring composition Alberto Apostolico, Olgert Denas Algorithms for Molecular Biology 2008, 3:13 (28 October 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  "Hook"-calibration of GeneChip-microarrays: Theory and algorithm Hans Binder, Stephan Preibisch Algorithms for Molecular Biology 2008, 3:12 (29 August 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research
  "Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures Hans Binder, Knut Krohn, Stephan Preibisch Algorithms for Molecular Biology 2008, 3:11 (29 August 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research
 A stitch in time: Efficient computation of genomic DNA melting bubbles Eivind Tøstesen Algorithms for Molecular Biology 2008, 3:10 (17 July 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps Peter Meinicke, Thomas Lingner, Alexander Kaever, Kirstin Feussner, Cornelia Göbel, Ivo Feussner, Petr Karlovsky, Burkhard Morgenstern Algorithms for Molecular Biology 2008, 3:9 (26 June 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research
  A weighted average difference method for detecting differentially expressed genes from microarray data Koji Kadota, Yuji Nakai, Kentaro Shimizu Algorithms for Molecular Biology 2008, 3:8 (26 June 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software article
 Noisy: Identification of problematic columns in multiple sequence alignments Andreas WM Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J Prohaska, Peter F Stadler Algorithms for Molecular Biology 2008, 3:7 (24 June 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment Amarendran R Subramanian, Michael Kaufmann, Burkhard Morgenstern Algorithms for Molecular Biology 2008, 3:6 (27 May 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
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