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Latest articles        [more info]
Book report    
Review of Bioinformatics: A Computing Perspective edited by Shuba Gopal, Anne Haake, Rhys Price Jones and Paul Tymann
Dae-Won Kim, Hong-Seog Park
Algorithms for Molecular Biology 2009, 4:9 (24 June 2009)
 [Abstract] [Full Text] [PDF]

Research    
A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series
Sara C Madeira, Arlindo L Oliveira
Algorithms for Molecular Biology 2009, 4:8 (4 June 2009)
 [Abstract] [Provisional PDF] [PubMed] [Related articles]

Research    
Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity
Koji Kadota, Yuji Nakai, Kentaro Shimizu
Algorithms for Molecular Biology 2009, 4:7 (22 April 2009)
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Research    
Evolving DNA motifs to predict GeneChip probe performance
WB Langdon, AP Harrison
Algorithms for Molecular Biology 2009, 4:6 (19 March 2009)
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Research    
A linear programming approach for estimating the structure of a sparse linear genetic network from transcript profiling data
Sahely Bhadra, Chiranjib Bhattacharyya, Nagasuma R Chandra, I Saira Mian
Algorithms for Molecular Biology 2009, 4:5 (24 February 2009)
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Research    
An image processing approach to computing distances between RNA secondary structures dot plots
Tor Ivry, Shahar Michal, Assaf Avihoo, Guillermo Sapiro, Danny Barash
Algorithms for Molecular Biology 2009, 4:4 (9 February 2009)
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Research    
Lossless filter for multiple repeats with bounded edit distance
Pierre Peterlongo, Gustavo Akio Tominaga Sacomoto, Alair Pereira do Lago, Nadia Pisanti, Marie-France Sagot
Algorithms for Molecular Biology 2009, 4:3 (30 January 2009)
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Software article    
CHSMiner: a GUI tool to identify chromosomal homologous segments
Zhen Wang, Guohui Ding, Zhonghao Yu, Lei Liu, Yixue Li
Algorithms for Molecular Biology 2009, 4:2 (15 January 2009)
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Research    
Auto-validating von Neumann rejection sampling from small phylogenetic tree spaces
Raazesh Sainudiin, Thomas York
Algorithms for Molecular Biology 2009, 4:1 (7 January 2009)
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Research    
HuMiTar: A sequence-based method for prediction of human microRNA targets
Jishou Ruan, Hanzhe Chen, Lukasz Kurgan, Ke Chen, Chunsheng Kang, Peiyu Pu
Algorithms for Molecular Biology 2008, 3:16 (22 December 2008)
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Short report    
Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family
Holger Wagner, Burkhard Morgenstern, Andreas Dress
Algorithms for Molecular Biology 2008, 3:15 (6 November 2008)
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Software article    
Syntenator: Multiple gene order alignments with a gene-specific scoring function
Christian Rödelsperger, Christoph Dieterich
Algorithms for Molecular Biology 2008, 3:14 (6 November 2008)
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Research    
Fast algorithms for computing sequence distances by exhaustive substring composition
Alberto Apostolico, Olgert Denas
Algorithms for Molecular Biology 2008, 3:13 (28 October 2008)
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Research    
"Hook"-calibration of GeneChip-microarrays: Theory and algorithm
Hans Binder, Stephan Preibisch
Algorithms for Molecular Biology 2008, 3:12 (29 August 2008)
 [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research    
"Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures
Hans Binder, Knut Krohn, Stephan Preibisch
Algorithms for Molecular Biology 2008, 3:11 (29 August 2008)
 [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research    
A stitch in time: Efficient computation of genomic DNA melting bubbles
Eivind Tøstesen
Algorithms for Molecular Biology 2008, 3:10 (17 July 2008)
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Research    
Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps
Peter Meinicke, Thomas Lingner, Alexander Kaever, Kirstin Feussner, Cornelia Göbel, Ivo Feussner, Petr Karlovsky, Burkhard Morgenstern
Algorithms for Molecular Biology 2008, 3:9 (26 June 2008)
 [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research    
A weighted average difference method for detecting differentially expressed genes from microarray data
Koji Kadota, Yuji Nakai, Kentaro Shimizu
Algorithms for Molecular Biology 2008, 3:8 (26 June 2008)
 [Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Software article    
Noisy: Identification of problematic columns in multiple sequence alignments
Andreas WM Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J Prohaska, Peter F Stadler
Algorithms for Molecular Biology 2008, 3:7 (24 June 2008)
 [Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research    
DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
Amarendran R Subramanian, Michael Kaufmann, Burkhard Morgenstern
Algorithms for Molecular Biology 2008, 3:6 (27 May 2008)
 [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

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